The DeCypher and CodeQuest systems are ideal for genomics specialists who are creating tools for data exploration and discovery, and those maintaining annotations within genome-specific portals.

TimeLogic's accelerated solutions free bioinformatics teams from the having to rely heavily on IT support. You can quickly process comprehensive BLAST, Smith-Waterman, and gene modeling analyses of your novel sequences against a well-curated database of known nucleic or protein sequences.

To reinforce your conclusions, it is possible to compare your protein sequence with an annotated Hidden Markov Model database such as PFAM. A match to a specific protein family can imply similar function. Additionally, the HMM-Framesearch method is available for automatic translation of your nucleic sequences and frameshift tolerant alignments while assigning protein families.

Reference:

Computational prediction and experimental validation of Ciona intestinalis microRNA genes, Norden-Krichmar TM et al., BMC Genomics 2007, 8:445 (29 November 2007).