TimeLogic Performance Examples:

Performance of a CodeQuest Workstation or DeCypher Enterprise node with 1 or 2 SeqCruncher™ Accelerators installed.

• Map 100,000 x 49-mers to the Arabidopsis genome:
  2.1 minutes (Tera-BLASTN, exact-match settings)
  
  
• Compare 100,000 ESTs to the Arabidopsis genome:
  7 minutes (Tera-BLASTN)
  
  
• Compare Human chromosome X to Y:
  7 minutes (Tera-BLASTN)
  
  
• Map 125,000 50-mers (direct & complement) to the Human genome with Smith-Waterman accuracy: 4 minutes (Tera-Probe™)
  
  
• Compare 10,000 protein sequences to UniProt:
  1 minute (Tera-BLASTP)
  
  
• Compare 5000 sequences to Chromosome 22 with intron-tolerance:
  1.7 hours (Double Affine Smith-Waterman)
  
  
• Compare 1,000 GOS sequences to PFAM:
  3 minutes (DeCypherHMM)
  
  
• Compare 5,000 EST sequences to PFAM:
  2 minutes, 11 seconds (DeCypherHMM)

Multi-node DeCypher systems scale to 10 servers and 20 SeqCruncher cards. As a performace guideline, doubling the accelerator count will deliver twice the system throughput.

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